Software
PEAKS (Bioinformatics Solutions Inc, Canada)
PEAKS software is a comprehensive, vendor-neutral proteomics tool to systematically identify and quantify peptides/proteins in a complex protein mixture using tandem mass spectrometry (LC-MS/MS). With PEAKS, you can directly load the raw LC-MS/MS data from the mass spectrometer (there's no need to convert the data first)and then, select the PEAKS workflows to perform peptide and protein identification (such as de novo sequencing, database and spectral library searching), PTM and mutation characterisation, and quantification. The interactive interface also provides a straightforward, easy-to-use user interface for data visualisation, validation, and reporting.
AGILENT MassHunter
Our Agilent LC/MS system is supported with the comprehensive MassHunter data analysis software suite. It comprises MassHunter Workstation Acquisition Software for sample analysis/run data acquisition and MassHunter Workstation Qualitative Analysis Software for metabolomic analysis where it is used for compound identification, paired with the validated Metlin Database. For intact mass analysis on an intact protein sample, the MassHunter BioConfirm Software is used, while for absolute quantification of targeted compound, the MassHunter Workstation Quantitative Analysis Software serves as the main software.
Spectrum Mill (AGILENT- Broad Institute)
Mass spectrometry has become a core technology for proteomics research, but without modern tools, there are often bottlenecks in data interpretation and review. The Agilent Spectrum Mill MS Proteomics Workbench is a comprehensive suite of software tools designed to facilitate high-throughput proteomics experiments using mass spectrometry.